2022 DiCOS Documentation

• About DiCOS
• DiCOS Account
  • Apply for a DiCOS Account
    • Non-AS Users
      • Step 1: Personal Information
      • Step 2: Confirm your e-mail address
      • Step 3: PI’s approval
      • Step 4: Start to use DiCOS services
    • AS Users (via SSO)
      • Step 1: Sign-up with Academia Sinica SSO
      • Step 2: Fill in application form
      • Step 3: Start to use DiCOS services
  • Edit DiCOS Account Password/Profile
  • DiCOS Account Lifetime
  • Apply for a DiCOS Group
• DiCOS Resources
  • DiCOS Resources
  • User Interface Node (Login Node)
  • DiCOS in a Nutshell
• DiCOS Job System
  • DiCOS User Interfaces (UIs)
  • DiCOS Queues
  • DiCOS Client Tools
    • Before using DiCOS CLI Tool
      • Preparation: Log in DiCOS command-line UI server
    • Quick Start Tutorial
    • How to use these dicos subcommands and options?
    • More Tips about DiCOS Subcommands
      • ping
      • job
      • submit
      • status
      • cancel
      • resubmit
      • getoutput
• Slurm Batch System
  • Slurm User Interfaces (UIs)
  • Slurm Resources and Queues
  • System Topography
  • Slurm Software
    • environment-modules
    • ssinfo
    • CVMFS
    • Docs
  • Slurm Tutorials
  • On Site Slurm Documents
  • Request for Specific Software Installation
• DiCOSApps
  • DiCOSApp Introduction
    • Use DiCOSApp
    • CryoEM Specific APPs
    • Jupyter Notebooks
    • RELION Job Configuration
      • What’s the ideal MPI number and thread number with current RELION APP?
      • What’s the ideal MPI number and thread number with Premium RELION v100 app?
      • What if RELION encounters error?
  • DiCOSApp Data Handling
    • 1. User HOME space
    • 2. DiCOSBOX(Cloud storage) space
    • 3. CryoEM group space (CryoEM user only)
  • Request for Specific Application Installation
• Data Storage and Transfer
  • User/Group Spaces in DiCOS System
    • DiCOS UI Home (NFS)
    • User Working Directory (Ceph)
    • Group Working Directory (Ceph)
  • Different Types of Storage in DiCOS
    • File Output (EOS)
    • Cloud Storage (Ceph)
    • CernVM-FS (CVMFS)
    • DiCOSBox
      • 1. Web Interface
      • 2. Command Line User Interface
  • Transfer Data from/to DiCOS
    • scp (command line)
    • FileZilla™ (Windows™/MacOS™/Linux)
    • MobaXterm™ (Windows™)
    • WinSCP™ (Windows™)
• Use Cases of Software with DiCOS
  • DiCOS Job Submit
  • Slurm
  • DiCOSApp
  • Comprehensive Cases
• Accounting and Pricing
  • Accounting Information
    • Monthly Accounting
    • Accounting/Usage Dashboard
  • Accounting Regulations
    • ASGC 研究型服務收費 (ASGC Pricing)
    • 中研院冷凍電顯大數據分析與資料儲存資源使用說明 (ASCEM‐ASGC Big Data Analysis Resource Usage for CryoEM Data Storage and Computing)
  • Pricing Rate
    • Computing Resource (CE)
    • Storage Resource (SE)
    • Power Consumpution
• Frequent Asked Questions (FAQ)
  • General
    • How could I know the computing environment (including the library, compiler, etc.) of DiCOS ?
    • How to use the Command Line Interface in DiCOS?
    • When I login in dicos-ui04.grid.sinica.edu.tw, I got port:22 connection denial. Why?
  • DiCOS Job System
    • When I use dicos ddm download command, it failed with the following messages: [2022-04-12 03:35:31,188 ERROR] Failed to download. What happened?
  • Slurm
    • How do I know the current usage/vacancy of specific machine of slurm?
    • How could I use python3? What should I do if I would like to install some python packages from pip?
    • I encounter an error when I compile my CUDA code on slurm-ui01. The error message is cannot open source file “cuda_runtime_api.h”. Could you help me solve this problem?
    • How to use nvcc in slurm? Could you give me some instructions?
  • DiCOSApp
    • How to get a CryoSPARC™ license?
    • Why I cannot click the launch button of specific DiCOSApp?
    • What happened that I cannot launch specific DiCOSApp even if the launch button is clickable?
• Publications and Acknowledgement
  • Copyright License
    • Work That Can be Freely Reused
    • Work That Cannot be Reused without Explicit Permission
  • Acknowledgement to ASGC
  • Citation Reference
• Agreement and Policies
  • ASGC Terms of Use
  • Acceptable Use Policy
  • ASGC Common Service Level Agreement
    • Service hours and exceptions
    • Support
      • Incident handling
      • Service requests
    • Service level targets
      • Monthly Availability
      • Monthly Reliability
      • Quality of Support level
    • Limitations and constraints
    • Violations
    • Information security and data protection
  • Privacy Policy
    • 1. Data controller
    • 2. Personal Data processed
      • Name, contact details and other Personal Data
      • Special categories of personal data
      • Other persons’s personal data
      • Browsing data
      • Cookies
    • 3. Purposes of processing
    • 4. Retention of Personal Data
    • 5. Data subjects’ rights
    • 6. Amendments
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